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Akira Akatsuki is excited to learn that his father, Nozomu, has completed his two year project for Stark International and has invited him and his older brother, Hikaru, to Ryker Island. After narrowly missing their flight, Akira and Hikaru are escorted to Ryker Island by Pepper Potts, courtesy of Tony Stark. During this time, a special presentation on Ryker Island is being held with several superheroes and VIPs in attendance, including three children, Edward Grant, Chris Taylor, and Jessica Shannon. Upon reuniting with his father, Akira is not particular happy that Tony is taking credit for Nozomu's project, the DISK system, which is designed for capturing supervillains, though Nozomu's assistant, Peter Parker, assures Akira it is because they wanted to protect them. Unbeknownst to anyone, mysterious characters sneak into the cells of the supervillains and help them escape by storing them inside the aforementioned DISKs. Whilst Edward, Chris, and Jessica sneak off to try and get closer to their favorite superheroes, Loki suddenly appears above Ryker Island and uses the DISKs to unleash supervillains all over the island. When Akira, Hikaru, and Nozomu are attacked by the Crimson Dynamo, who is looking for an 'installer', they are assisted by the arrival of Spider-Man.

After Spider-Man deals with the Crimson Dynamo, Nozomu gives the biocode installer to Akira and Hikaru, urging them to escape with Spider-Man to the heliport via an escape route, where they run into Edward, Chris, and Jessica. Meanwhile, as the other superheroes try to deal with the crisis on the island, S.H.I.E.L.D. headquarters is also attacked by supervillains, prompting Nick Fury to step into action. As Spider-Man is separated from the group when he is confronted by the Green Goblin, King Cobra takes Pepper hostage, leaving the heroes unable to put up any resistance against Loki, who uses the DISKs to imprison them one by one. As Akira states his desire to save Pepper and the heroes, Hikaru comes up with a plan.

In an attempt to free Pepper, Akira attempts to trick King Cobra under an avalanche of crates, but fails. Chris arrives with a forklift and knocks the crates down, but King Cobra slips out. While Loki is in the middle of imprisoning the rest of the heroes, Iron Man frees himself and takes down King Cobra, while the kids free Pepper. The celebration is cut short when Loki arrives with Tom and M.O.D.O.K., who destroys the biocode installer. At the same time, S.H.I.E.L.D. is detained by Cottonmouth. Iron Man tricks Loki into firing a burst of energy that supercharges the remains of the installer, integrating a biocode into each of the kids. Tom traps Iron Man in a DISK, which is then taken by Spider-Man, who instructs Akira to send Iron Man out to finish the job. Akira and Loki's wristbands make contact with each other during a scuffle, causing all the DISKs in the immediate area to fall into a pocket dimension. Loki withdraws with Tom, and Nick Fury arrives at the scene after the battle and takes Akira and Hikaru into S.H.I.E.L.D. custody.

After the events at the Raft, Akira and Hikaru are taken aboard the Helicarrier while the other three are sent safely home. There, Nick Fury and a tiny hologram Iron Man (from inside the red DISK) reveal that because the biocode installer was damaged when it installed a biocode in the kids, the kids have a Limited Biocode, which only allows the released heroes to be outside the DISK for a few minutes and also requires hours to recharge. A man by the name of Senator Robert enters with incriminating photos of Fury, Tim, and Loki, leading to Fury's arrest and the temporary decommission of S.H.I.E.L.D. During all this, Spider-Man has recovered the DISKs containing Thor, Captain America, Hulk, and Wasp. Robert denies permission for S.H.I.E.L.D. to intervene when Lizard is seen on a rampage, leading Akira, Iron Man, and Spider-Man to intervene on their own. After Lizard is D-Secured, Iron Man runs out of time and a blonde masked woman (Rosetta Riley in disguise) sends out Diamondback to finish the job with the other two. Meanwhile, Hawkeye approaches Hikaru with a DISK wristband and offers him the chance to help off the radar.

Together With The Guardians.